Selected Publications

Džunková, M., Low, S.J., Daly, J.N., Deng, L., Rinke, C., Hugenholtz, P. (2019). Defining the human gut host-phage network through single-cell viral tagging. Nature Microbiology.

Jiang Y, Huang H, Ma T, Ru J, Blank S, Kurmayer R, Deng L. (2019). Temperature Response of Planktonic Microbiota in Remote Alpine Lakes. Frontiers in Microbiology 10.

Simon LM, Karg S, Westermann A J, Engel M, Elbehery AHA, Hense B, Heinig M, Deng L, Theis F J. (2018). MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data. GigaScience giy070.

Hufsky F, Ibrahim B, Beer M, Deng L, Le Mercier P, McMahon D, Palmarini M, Thiel V and Marz M. (2018). Virologists - heroes need weapons. Plos Pathogens, 14(2): e1006771.

Feichtmayer, J., Deng, L., & Griebler, C. (2017). Antagonistic microbial interactions: Contributions and potential applications for controlling pathogens in the aquatic systems. Frontiers in Microbiology,8.

Deng, L., Krauss, S., Feichtmayer, J., Hofmann, R., Arndt, H., & Griebler, C. (2014). Grazing of heterotrophic flagellates on viruses is driven by feeding behaviour. Environmental Microbiology Reports, 6(4).

Deng, L., Ignacio-Espinoza, J. C., Gregory, A. C., Poulos, B. T., Weitz, J. S., Hugenholtz, P., & Sullivan, M. B. (2014). Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature, 513(7517), 242–245.

Hurwitz, B. L., Deng, L., Poulos, B. T., & Sullivan, M. B. (2013). Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics. Environmental Microbiology, 15(5), 1428–1440.

Duhaime, M. B., Deng, L., Poulos, B. T., & Sullivan, M. B. (2012). Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method. Environ Microbiol, 14(9), 2526–2537.

Deng, L., Gregory, A., Yilmaz, S., Poulos, B. T., Hugenholtz, P., & Sullivan, M. B. (2012). Contrasting life strategies of viruses that infect photo- and heterotrophic bacteria, as revealed by viral tagging. MBio, 3(6), 1–8.

John, S. G., Mendez, C. B., Deng, L., Poulos, B., Kauffman, A. K. M., Kern, S., … Sullivan, M. B. (2011). A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environmental Microbiology Reports, 3(2), 195–202.